Course Modules: OpenStax Microbiology

Chapter 1

Chapter 1 Chapter 1

Context Module Sub Header

Chapter Readings 1

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1 Introduction 1 Introduction 2

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1.1 What Our Ancestors Knew 1.1 What Our Ancestors Knew 3

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1.2 A Systematic Approach 1.2 A Systematic Approach 4

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1.3 Types of Microorganisms 1.3 Types of Microorganisms 5

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Chapter 2

Chapter 2 Chapter 2

Context Module Sub Header

Chapter Readings 1

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2 Introduction 2 Introduction 2

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2.1 The Properties of Light 2.1 The Properties of Light 3

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2.2 Peering Into the Invisible World 2.2 Peering Into the Invisible World 4

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2.3 Instruments of Microscopy 2.3 Instruments of Microscopy 5

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2.4 Staining Microscopic Specimens 2.4 Staining Microscopic Specimens 6

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Chapter 3

Chapter 3 Chapter 3

Context Module Sub Header

Chapter Readings 1

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3 Introduction 3 Introduction 2

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3.1 Spontaneous Generation 3.1 Spontaneous Generation 3

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3.2 Foundations of Modern Cell Theory 3.2 Foundations of Modern Cell Theory 4

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3.3 Unique Characteristics of Prokaryotic Cells 3.3 Unique Characteristics of Prokaryotic Cells 5

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3.4 Unique Characteristics of Eukaryotic Cells 3.4 Unique Characteristics of Eukaryotic Cells 6

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Chapter 4

Chapter 4 Chapter 4

Context Module Sub Header

Chapter Readings 1

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4 Introduction 4 Introduction 2

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4.1 Prokaryote Habitats, Relationships, and Microbiomes 4.1 Prokaryote Habitats, Relationships, and Microbiomes 3

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4.2 Proteobacteria 4.2 Proteobacteria 4

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4.3 Nonproteobacteria Gram-Negative Bacteria and Phototrophic Bacteria 4.3 Nonproteobacteria Gram-Negative Bacteria and Phototrophic Bacteria 5

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4.4 Gram-Positive Bacteria 4.4 Gram-Positive Bacteria 6

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4.5 Deeply Branching Bacteria 4.5 Deeply Branching Bacteria 7

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4.6 Archaea 4.6 Archaea 8

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Chapter 5

Chapter 5 Chapter 5

Context Module Sub Header

Chapter Readings 1

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5 Introduction 5 Introduction 2

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External Url

5.1 Unicellular Eukaryotic Parasites 5.1 Unicellular Eukaryotic Parasites 3

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5.2 Parasitic Helminths 5.2 Parasitic Helminths 4

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5.3 Fungi 5.3 Fungi 5

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5.4 Algae 5.4 Algae 6

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5.5 Lichens 5.5 Lichens 7

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Chapter 6

Chapter 6 Chapter 6

Context Module Sub Header

Chapter Readings 1

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6 Introduction 6 Introduction 2

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6.1 Viruses 6.1 Viruses 3

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6.2 The Viral Life Cycle 6.2 The Viral Life Cycle 4

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6.3 Isolation, Culture, and Identification of Viruses 6.3 Isolation, Culture, and Identification of Viruses 5

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6.4 Viroids, Virusoids, and Prions 6.4 Viroids, Virusoids, and Prions 6

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Chapter 7

Chapter 7 Chapter 7

Context Module Sub Header

Chapter Readings 1

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7 Introduction 7 Introduction 2

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7.1 Organic Molecules 7.1 Organic Molecules 3

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7.2 Carbohydrates 7.2 Carbohydrates 4

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7.3 Lipids 7.3 Lipids 5

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7.4 Proteins 7.4 Proteins 6

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7.5 Using Biochemistry to Identify Microorganisms 7.5 Using Biochemistry to Identify Microorganisms 7

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Chapter 8

Chapter 8 Chapter 8

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Chapter Readings 1

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8 Introduction 8 Introduction 2

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8.1 Energy, Matter, and Enzymes 8.1 Energy, Matter, and Enzymes 3

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8.2 Catabolism of Carbohydrates 8.2 Catabolism of Carbohydrates 4

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8.3 Cellular Respiration 8.3 Cellular Respiration 5

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8.4 Fermentation 8.4 Fermentation 6

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8.5 Catabolism of Lipids and Proteins 8.5 Catabolism of Lipids and Proteins 7

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8.6 Photosynthesis 8.6 Photosynthesis 8

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8.7 Biogeochemical Cycles 8.7 Biogeochemical Cycles 9

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Chapter 9

Chapter 9 Chapter 9

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Chapter Readings 1

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9 Introduction 9 Introduction 2

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9.1 How Microbes Grow 9.1 How Microbes Grow 3

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9.2 Oxygen Requirements for Microbial Growth 9.2 Oxygen Requirements for Microbial Growth 4

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9.3 The Effects of pH on Microbial Growth 9.3 The Effects of pH on Microbial Growth 5

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9.4 Temperature and Microbial Growth 9.4 Temperature and Microbial Growth 6

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9.5 Other Environmental Conditions that Affect Growth 9.5 Other Environmental Conditions that Affect Growth 7

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9.6 Media Used for Bacterial Growth 9.6 Media Used for Bacterial Growth 8

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Chapter 10

Chapter 10 Chapter 10

Context Module Sub Header

Chapter Readings 1

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10 Introduction 10 Introduction 2

external_url 254792 0

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External Url

10.1 Using Microbiology to Discover the Secrets of Life 10.1 Using Microbiology to Discover the Secrets of Life 3

external_url 254793 0

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10.2 Structure and Function of DNA 10.2 Structure and Function of DNA 4

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10.3 Structure and Function of RNA 10.3 Structure and Function of RNA 5

external_url 254795 0

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10.4 Structure and Function of Cellular Genomes 10.4 Structure and Function of Cellular Genomes 6

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Chapter 11

Chapter 11 Chapter 11

Context Module Sub Header

Chapter Readings 1

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External Url

11 Introduction 11 Introduction 2

external_url 254798 0

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External Url

11.1 The Functions of Genetic Material 11.1 The Functions of Genetic Material 3

external_url 254799 0

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External Url

11.2 DNA Replication 11.2 DNA Replication 4

external_url 254800 0

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11.3 RNA Transcription 11.3 RNA Transcription 5

external_url 254801 0

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External Url

11.4 Protein Synthesis (Translation) 11.4 Protein Synthesis (Translation) 6

external_url 254802 0

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11.5 Mutations 11.5 Mutations 7

external_url 254803 0

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11.6 How Asexual Prokaryotes Achieve Genetic Diversity 11.6 How Asexual Prokaryotes Achieve Genetic Diversity 8

external_url 254804 0

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External Url

11.7 Gene Regulation: Operon Theory 11.7 Gene Regulation: Operon Theory 9

external_url 254805 0

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Chapter 12

Chapter 12 Chapter 12

Context Module Sub Header

Chapter Readings 1

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External Url

12 Introduction 12 Introduction 2

external_url 254807 0

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External Url

12.1 Microbes and the Tools of Genetic Engineering 12.1 Microbes and the Tools of Genetic Engineering 3

external_url 254808 0

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External Url

12.2 Visualizing and Characterizing DNA, RNA, and Protein 12.2 Visualizing and Characterizing DNA, RNA, and Protein 4

external_url 254809 0

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External Url

12.3 Whole Genome Methods and Pharmaceutical Applications of Genetic Engineering 12.3 Whole Genome Methods and Pharmaceutical Applications of Genetic Engineering 5

external_url 254810 0

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External Url

12.4 Gene Therapy 12.4 Gene Therapy 6

external_url 254811 0

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Chapter 13

Chapter 13 Chapter 13

Context Module Sub Header

Chapter Readings 1

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External Url

13 Introduction 13 Introduction 2

external_url 254813 0

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External Url

13.1 Controlling Microbial Growth 13.1 Controlling Microbial Growth 3

external_url 254814 0

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External Url

13.2 Using Physical Methods to Control Microorganisms 13.2 Using Physical Methods to Control Microorganisms 4

external_url 254815 0

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External Url

13.3 Using Chemicals to Control Microorganisms 13.3 Using Chemicals to Control Microorganisms 5

external_url 254816 0

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13.4 Testing the Effectiveness of Antiseptics and Disinfectants 13.4 Testing the Effectiveness of Antiseptics and Disinfectants 6

external_url 254817 0

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Chapter 14

Chapter 14 Chapter 14

Context Module Sub Header

Chapter Readings 1

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External Url

14 Introduction 14 Introduction 2

external_url 254819 0

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External Url

14.1 History of Chemotherapy and Antimicrobial Discovery 14.1 History of Chemotherapy and Antimicrobial Discovery 3

external_url 254820 0

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External Url

14.2 Fundamentals of Antimicrobial Chemotherapy 14.2 Fundamentals of Antimicrobial Chemotherapy 4

external_url 254821 0

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External Url

14.3 Mechanisms of Antibacterial Drugs 14.3 Mechanisms of Antibacterial Drugs 5

external_url 254822 0

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14.4 Mechanisms of Other Antimicrobial Drugs 14.4 Mechanisms of Other Antimicrobial Drugs 6

external_url 254823 0

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External Url

14.5 Drug Resistance 14.5 Drug Resistance 7

external_url 254824 0

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External Url

14.6 Testing the Effectiveness of Antimicrobials 14.6 Testing the Effectiveness of Antimicrobials 8

external_url 254825 0

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External Url

14.7 Current Strategies for Antimicrobial Discovery 14.7 Current Strategies for Antimicrobial Discovery 9

external_url 254826 0

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Chapter 15

Chapter 15 Chapter 15

Context Module Sub Header

Chapter Readings 1

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External Url

15 Introduction 15 Introduction 2

external_url 254828 0

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External Url

15.1 Characteristics of Infectious Disease 15.1 Characteristics of Infectious Disease 3

external_url 254829 0

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15.2 How Pathogens Cause Disease 15.2 How Pathogens Cause Disease 4

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15.3 Virulence Factors of Bacterial and Viral Pathogens 15.3 Virulence Factors of Bacterial and Viral Pathogens 5

external_url 254831 0

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External Url

15.4 Virulence Factors of Eukaryotic Pathogens 15.4 Virulence Factors of Eukaryotic Pathogens 6

external_url 254832 0

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Chapter 16

Chapter 16 Chapter 16

Context Module Sub Header

Chapter Readings 1

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External Url

16 Introduction 16 Introduction 2

external_url 254834 0

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External Url

16.1 The Language of Epidemiologists 16.1 The Language of Epidemiologists 3

external_url 254835 0

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16.2 Tracking Infectious Diseases 16.2 Tracking Infectious Diseases 4

external_url 254836 0

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16.3 Modes of Disease Transmission 16.3 Modes of Disease Transmission 5

external_url 254837 0

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16.4 Global Public Health 16.4 Global Public Health 6

external_url 254838 0

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Chapter 17

Chapter 17 Chapter 17

Context Module Sub Header

Chapter Readings 1

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External Url

17 Introduction 17 Introduction 2

external_url 254840 0

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External Url

17.1 Physical Defenses 17.1 Physical Defenses 3

external_url 254841 0

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17.2 Chemical Defenses 17.2 Chemical Defenses 4

external_url 254842 0

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External Url

17.3 Cellular Defenses 17.3 Cellular Defenses 5

external_url 254843 0

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External Url

17.4 Pathogen Recognition and Phagocytosis 17.4 Pathogen Recognition and Phagocytosis 6

external_url 254844 0

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External Url

17.5 Inflammation and Fever 17.5 Inflammation and Fever 7

external_url 254845 0

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Chapter 18

Chapter 18 Chapter 18

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254846 0

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External Url

18 Introduction 18 Introduction 2

external_url 254847 0

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External Url

18.1 Overview of Specific Adaptive Immunity 18.1 Overview of Specific Adaptive Immunity 3

external_url 254848 0

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External Url

18.2 Major Histocompatibility Complexes and Antigen-Presenting Cells 18.2 Major Histocompatibility Complexes and Antigen-Presenting Cells 4

external_url 254849 0

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External Url

18.3 T Lymphocytes and Cellular Immunity 18.3 T Lymphocytes and Cellular Immunity 5

external_url 254850 0

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External Url

18.4 B Lymphocytes and Humoral Immunity 18.4 B Lymphocytes and Humoral Immunity 6

external_url 254851 0

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External Url

18.5 Vaccines 18.5 Vaccines 7

external_url 254852 0

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Chapter 19

Chapter 19 Chapter 19

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254853 0

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External Url

19 Introduction 19 Introduction 2

external_url 254854 0

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External Url

19.1 Hypersensitivities 19.1 Hypersensitivities 3

external_url 254855 0

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External Url

19.2 Autoimmune Disorders 19.2 Autoimmune Disorders 4

external_url 254856 0

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External Url

19.3 Organ Transplantation and Rejection 19.3 Organ Transplantation and Rejection 5

external_url 254857 0

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External Url

19.4 Immunodeficiency 19.4 Immunodeficiency 6

external_url 254858 0

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External Url

19.5 Cancer Immunobiology and Immunotherapy 19.5 Cancer Immunobiology and Immunotherapy 7

external_url 254859 0

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Chapter 20

Chapter 20 Chapter 20

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254860 0

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External Url

20 Introduction 20 Introduction 2

external_url 254861 0

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External Url

20.1 Polyclonal and Monoclonal Antibody Production 20.1 Polyclonal and Monoclonal Antibody Production 3

external_url 254862 0

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External Url

20.2 Detecting Antigen-Antibody Complexes 20.2 Detecting Antigen-Antibody Complexes 4

external_url 254863 0

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External Url

20.3 Agglutination Assays 20.3 Agglutination Assays 5

external_url 254864 0

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External Url

20.4 EIAs and ELISAs 20.4 EIAs and ELISAs 6

external_url 254865 0

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External Url

20.5 Fluorescent Antibody Techniques 20.5 Fluorescent Antibody Techniques 7

external_url 254866 0

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Chapter 21

Chapter 21 Chapter 21

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254867 0

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External Url

21 Introduction 21 Introduction 2

external_url 254868 0

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External Url

21.1 Anatomy and Normal Microbiota of the Skin and Eyes 21.1 Anatomy and Normal Microbiota of the Skin and Eyes 3

external_url 254869 0

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External Url

21.2 Bacterial Infections of the Skin and Eyes 21.2 Bacterial Infections of the Skin and Eyes 4

external_url 254870 0

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External Url

21.3 Viral Infections of the Skin and Eyes 21.3 Viral Infections of the Skin and Eyes 5

external_url 254871 0

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External Url

21.4 Mycoses of the Skin 21.4 Mycoses of the Skin 6

external_url 254872 0

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External Url

21.5 Protozoan and Helminthic Infections of the Skin and Eyes 21.5 Protozoan and Helminthic Infections of the Skin and Eyes 7

external_url 254873 0

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Chapter 22

Chapter 22 Chapter 22

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254874 0

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External Url

22 Introduction 22 Introduction 2

external_url 254875 0

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External Url

22.1 Anatomy and Normal Microbiota of the Respiratory Tract 22.1 Anatomy and Normal Microbiota of the Respiratory Tract 3

external_url 254876 0

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External Url

22.2 Bacterial Infections of the Respiratory Tract 22.2 Bacterial Infections of the Respiratory Tract 4

external_url 254877 0

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External Url

22.3 Viral Infections of the Respiratory Tract 22.3 Viral Infections of the Respiratory Tract 5

external_url 254878 0

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External Url

22.4 Respiratory Mycoses 22.4 Respiratory Mycoses 6

external_url 254879 0

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Chapter 23

Chapter 23 Chapter 23

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254880 0

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External Url

23 Introduction 23 Introduction 2

external_url 254881 0

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External Url

23.1 Anatomy and Normal Microbiota of the Urogenital Tract 23.1 Anatomy and Normal Microbiota of the Urogenital Tract 3

external_url 254882 0

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External Url

23.2 Bacterial Infections of the Urinary System 23.2 Bacterial Infections of the Urinary System 4

external_url 254883 0

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External Url

23.3 Bacterial Infections of the Reproductive System 23.3 Bacterial Infections of the Reproductive System 5

external_url 254884 0

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External Url

23.4 Viral Infections of the Reproductive System 23.4 Viral Infections of the Reproductive System 6

external_url 254885 0

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External Url

23.5 Fungal Infections of the Reproductive System 23.5 Fungal Infections of the Reproductive System 7

external_url 254886 0

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External Url

23.6 Protozoan Infections of the Urogenital System 23.6 Protozoan Infections of the Urogenital System 8

external_url 254887 0

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Chapter 24

Chapter 24 Chapter 24

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254888 0

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External Url

24 Introduction 24 Introduction 2

external_url 254889 0

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External Url

24.1 Anatomy and Normal Microbiota of the Digestive System 24.1 Anatomy and Normal Microbiota of the Digestive System 3

external_url 254890 0

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External Url

24.2 Microbial Diseases of the Mouth and Oral Cavity 24.2 Microbial Diseases of the Mouth and Oral Cavity 4

external_url 254891 0

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External Url

24.3 Bacterial Infections of the Gastrointestinal Tract 24.3 Bacterial Infections of the Gastrointestinal Tract 5

external_url 254892 0

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External Url

24.4 Viral Infections of the Gastrointestinal Tract 24.4 Viral Infections of the Gastrointestinal Tract 6

external_url 254893 0

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External Url

24.5 Protozoan Infections of the Gastrointestinal Tract 24.5 Protozoan Infections of the Gastrointestinal Tract 7

external_url 254894 0

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External Url

24.6 Helminthic Infections of the Gastrointestinal Tract 24.6 Helminthic Infections of the Gastrointestinal Tract 8

external_url 254895 0

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Chapter 25

Chapter 25 Chapter 25

Context Module Sub Header

Chapter Readings 1

context_module_sub_header 254896 0

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External Url

25 Introduction 25 Introduction 2

external_url 254897 0

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External Url

25.1 Anatomy of the Circulatory and Lymphatic Systems 25.1 Anatomy of the Circulatory and Lymphatic Systems 3

external_url 254898 0

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External Url

25.2 Bacterial Infections of the Circulatory and Lymphatic Systems 25.2 Bacterial Infections of the Circulatory and Lymphatic Systems 4

external_url 254899 0

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External Url

25.3 Viral Infections of the Circulatory and Lymphatic Systems 25.3 Viral Infections of the Circulatory and Lymphatic Systems 5

external_url 254900 0

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External Url

25.4 Parasitic Infections of the Circulatory and Lymphatic Systems 25.4 Parasitic Infections of the Circulatory and Lymphatic Systems 6

external_url 254901 0

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Chapter 26

Chapter 26 Chapter 26

Context Module Sub Header

Chapter Readings 1

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External Url

26 Introduction 26 Introduction 2

external_url 254903 0

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External Url

26.1 Anatomy of the Nervous System 26.1 Anatomy of the Nervous System 3

external_url 254904 0

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External Url

26.2 Bacterial Diseases of the Nervous System 26.2 Bacterial Diseases of the Nervous System 4

external_url 254905 0

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External Url

26.3 Acellular Diseases of the Nervous System 26.3 Acellular Diseases of the Nervous System 5

external_url 254906 0

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External Url

26.4 Fungal and Parasitic Diseases of the Nervous System 26.4 Fungal and Parasitic Diseases of the Nervous System 6

external_url 254907 0

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Additional Readings

Additional Readings Additional Readings

External Url

Fundamentals of Physics and Chemistry Important to Microbiology Fundamentals of Physics and Chemistry Important to Microbiology 1

external_url 254908 0

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External Url

Mathematical Basics Mathematical Basics 2

external_url 254909 0

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External Url

Metabolic Pathways Metabolic Pathways 3

external_url 254910 0

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External Url

Taxonomy of Clinically Relevant Microorganisms Taxonomy of Clinically Relevant Microorganisms 4

external_url 254911 0

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External Url

Glossary Glossary 5

external_url 254912 0

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